RashidanNassouryGiannopoulosEtAl2004

Référence

Rashidan, K.K., Nassoury, N., Giannopoulos, P.N., Mauffette, Y., Guertin, C. (2004) Identification, characterization and phylogenic analysis of conserved genes within the p74 gene region of Choristoneura fumiferana granulovirus genome. Journal of Biochemistry and Molecular Biology, 37(6):700-708.

Résumé

The genes located within the p74 gene region of the Choristoneura fumiferana granulovirus (ChfuGV) were identified by sequencing an 8.9 kb BamHI restriction fragment on the ChfuGV genome. The global guanine-cytosine (GC) content of this region of the genome was 33.02%. This paper presents the ORFs within the p74 gene region along with their transcriptional orientations. This region contains a total of 15 open reading frames (ORFs). Among those, 8 ORFs were found to be homologues to the baculoviral ORFs: Cf-i-p, Cf-vi, Cf-vii, Cf-viii (ubiquitin), Cf-xi (pp31), Cf-xii (lef-11), Cf-xiii (sod) and Cf-xv-p (p74). To date, no specific function has been assigned to the ORFs: Cf-i, Cf-ii, Cf-iii, Cf-iv, Cf-v, Cf-vi, Cf-vii, Cf-ix and Cf-x. The most noticeable ORFs located in this region of the ChfuGV genome were ubiquitin, lef-11, sod, fibrillin and p74. The phylogenetic trees (constructed using conceptual products of major conserved ORFs) and gene arrangement in this region were used to further examine the classification of the members of the granulovirus genus. Comparative studies demonstrated that ChfuGV along with the Cydia pomonella granulovirus (CpGV), Phthorimaea operculella granulovirus (PhopGV), Adoxophyes orana granulovirus (AoGV) and Cryptophlebia leucotreta granulovirus (ClGV) share a high degree of amino acids sequence and gene arrangement preservation within the studied region. These results support a previous report, which classified a granuloviruses into 2 distinct groups: Group I: ChfuGV, CpGV, PhopGV and AoGV and Group II: Xestia c-nigrum granulovirus (XcGV) and Plutella xylostella granulovirus (PxGV). The phylogenetic and gene arrangement studies also placed ClGV as a novel member of the Group I granuloviruses.

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@ARTICLE { RashidanNassouryGiannopoulosEtAl2004,
    AUTHOR = { Rashidan, K.K. and Nassoury, N. and Giannopoulos, P.N. and Mauffette, Y. and Guertin, C. },
    TITLE = { Identification, characterization and phylogenic analysis of conserved genes within the p74 gene region of Choristoneura fumiferana granulovirus genome },
    JOURNAL = { Journal of Biochemistry and Molecular Biology },
    YEAR = { 2004 },
    VOLUME = { 37 },
    PAGES = { 700-708 },
    NUMBER = { 6 },
    NOTE = { 12258687 (ISSN) Cited By (since 1996): 2 Export Date: 25 April 2007 Source: Scopus Language of Original Document: English Correspondence Address: Rashidan, K.K.; Inst. Natl. de la Rech. Scientifique; Institut Armand-Frappier; 531 Blvd des Prairies Laval, Que. H7V 1B7, Canada; email: kiarashidan@juno.com Molecular Sequence Numbers: GENBANK: AAA66667, AAC13879, AAC63712, AAC70230, AAF05170, AAF33648, AAG27344, AAK70718, AAK85585, AAK85684, AAL01720, AAM70251, AAM95134, AAN28128, AAN28152, AAP85687, AAQ21651, AB009614, AP006270, BAA02637, ANN77187, ANN77188, ANN77189, ANN77190, ANN77191, ANN77192, ANN77193, ANN77194, ANN77195, ANN77196, ANN77197, ANN77198, ANN77199, ANN77200; Chemicals/CAS: protein, 67254-75-5; ubiquitin, 60267-61-0 References: Acosta-Serrano, A., Vassella, E., Liniger, M., Kunz Renggli, C., Brun, R., Roditi, I., England, P.T., The surface coat of procyclic Trypanosoma brucei: Programmed expression and proteolytic cleavage of procyclin in the tsetse fly (2001) Proc. Natl. Acad. Sci. USA, 98, pp. 1513-1518; Afonso, C.L., Tulman, E.R., Lu, Z., Balinsky, C.A., Moser, B.A., Becnel, J.J., Rock, D.L., Kutish, G.F., Genome sequence of a baculovirus pathogenic for Culex nigripalpus (2001) J. 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    ABSTRACT = { The genes located within the p74 gene region of the Choristoneura fumiferana granulovirus (ChfuGV) were identified by sequencing an 8.9 kb BamHI restriction fragment on the ChfuGV genome. The global guanine-cytosine (GC) content of this region of the genome was 33.02%. This paper presents the ORFs within the p74 gene region along with their transcriptional orientations. This region contains a total of 15 open reading frames (ORFs). Among those, 8 ORFs were found to be homologues to the baculoviral ORFs: Cf-i-p, Cf-vi, Cf-vii, Cf-viii (ubiquitin), Cf-xi (pp31), Cf-xii (lef-11), Cf-xiii (sod) and Cf-xv-p (p74). To date, no specific function has been assigned to the ORFs: Cf-i, Cf-ii, Cf-iii, Cf-iv, Cf-v, Cf-vi, Cf-vii, Cf-ix and Cf-x. The most noticeable ORFs located in this region of the ChfuGV genome were ubiquitin, lef-11, sod, fibrillin and p74. The phylogenetic trees (constructed using conceptual products of major conserved ORFs) and gene arrangement in this region were used to further examine the classification of the members of the granulovirus genus. Comparative studies demonstrated that ChfuGV along with the Cydia pomonella granulovirus (CpGV), Phthorimaea operculella granulovirus (PhopGV), Adoxophyes orana granulovirus (AoGV) and Cryptophlebia leucotreta granulovirus (ClGV) share a high degree of amino acids sequence and gene arrangement preservation within the studied region. These results support a previous report, which classified a granuloviruses into 2 distinct groups: Group I: ChfuGV, CpGV, PhopGV and AoGV and Group II: Xestia c-nigrum granulovirus (XcGV) and Plutella xylostella granulovirus (PxGV). The phylogenetic and gene arrangement studies also placed ClGV as a novel member of the Group I granuloviruses. },
    KEYWORDS = { Baculovirus Choristoneura fumiferana granulovirus Gene arrangement Phylogeny protein protein p74 Adoxophyes Adoxophyes orana Adoxophyes orana granulovirus Choristoneura fumiferana Choristoneura fumiferana granulovirus Cryptophlebia Cryptophlebia leucotreta Cryptophlebia leucotreta granulovirus Cydia pomonella Cydia pomonella granulovirus Phthorimaea Phthorimaea operculella Phthorimaea operculella granulovirus Plutella xylostella Plutella xylostella granulovirus unidentified baculovirus Xestia Xestia c-nigrum Xestia c-nigrum granulovirus },
    OWNER = { brugerolles },
    TIMESTAMP = { 2007.12.05 },
}

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