JackmanCoombeWarrenEtAl2020

Référence

Jackman, S.D., Coombe, L., Warren, R.L., Kirk, H., Trinh, E., MacLeod, T., Pleasance, S., Pandoh, P., Zhao, Y., Coope, R.J., Bousquet, J., Bohlmann, J., Jones, S.J.M., Birol, I. (2020) Complete Mitochondrial Genome of a Gymnosperm, Sitka Spruce (Picea sitchensis), Indicates a Complex Physical Structure. Genome biology and evolution, 12(7):1174-1179. (Scopus )

Résumé

Plant mitochondrial genomes vary widely in size. Although many plant mitochondrial genomes have been sequenced and assembled, the vast majority are of angiosperms, and few are of gymnosperms. Most plant mitochondrial genomes are smaller than a megabase, with a few notable exceptions. We have sequenced and assembled the complete 5.5-Mb mitochondrial genome of Sitka spruce (Picea sitchensis), to date, one of the largest mitochondrial genomes of a gymnosperm. We sequenced the whole genome using Oxford Nanopore MinION, and then identified contigs of mitochondrial origin assembled from these long reads based on sequence homology to the white spruce mitochondrial genome. The assembly graph shows a multipartite genome structure, composed of one smaller 168-kb circular segment of DNA, and a larger 5.4-Mb single component with a branching structure. The assembly graph gives insight into a putative complex physical genome structure, and its branching points may represent active sites of recombination. © The Author(s) 2020. Published by Oxford University Press on behalf of the Society for Molecular Biology and Evolution.

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@ARTICLE { JackmanCoombeWarrenEtAl2020,
    AUTHOR = { Jackman, S.D. and Coombe, L. and Warren, R.L. and Kirk, H. and Trinh, E. and MacLeod, T. and Pleasance, S. and Pandoh, P. and Zhao, Y. and Coope, R.J. and Bousquet, J. and Bohlmann, J. and Jones, S.J.M. and Birol, I. },
    JOURNAL = { Genome biology and evolution },
    TITLE = { Complete Mitochondrial Genome of a Gymnosperm, Sitka Spruce (Picea sitchensis), Indicates a Complex Physical Structure },
    YEAR = { 2020 },
    NOTE = { cited By 0 },
    NUMBER = { 7 },
    PAGES = { 1174-1179 },
    VOLUME = { 12 },
    ABSTRACT = { Plant mitochondrial genomes vary widely in size. Although many plant mitochondrial genomes have been sequenced and assembled, the vast majority are of angiosperms, and few are of gymnosperms. Most plant mitochondrial genomes are smaller than a megabase, with a few notable exceptions. We have sequenced and assembled the complete 5.5-Mb mitochondrial genome of Sitka spruce (Picea sitchensis), to date, one of the largest mitochondrial genomes of a gymnosperm. We sequenced the whole genome using Oxford Nanopore MinION, and then identified contigs of mitochondrial origin assembled from these long reads based on sequence homology to the white spruce mitochondrial genome. The assembly graph shows a multipartite genome structure, composed of one smaller 168-kb circular segment of DNA, and a larger 5.4-Mb single component with a branching structure. The assembly graph gives insight into a putative complex physical genome structure, and its branching points may represent active sites of recombination. © The Author(s) 2020. Published by Oxford University Press on behalf of the Society for Molecular Biology and Evolution. },
    AFFILIATION = { Genome Sciences Centre, Vancouver, BC, Canada; Forest Genomics, Institute for Systems and Integrative Biology, Université LavalQC, Canada; Michael Smith Laboratories, University of British Columbia, Vancouver, BC, Canada },
    AUTHOR_KEYWORDS = { ABySS; genome assembly; gymnosperms; organelle; sequencing; Sitka spruce },
    DOCUMENT_TYPE = { Article },
    DOI = { 10.1093/gbe/evaa108 },
    SOURCE = { Scopus },
    URL = { https://www.scopus.com/inward/record.uri?eid=2-s2.0-85090880032&doi=10.1093%2fgbe%2fevaa108&partnerID=40&md5=37fab0006464b69d9b885efa715065ed },
}

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