Ilga Porth

Regular Member
Génétique et amélioration des arbres, Génomique forestière
Université Laval
Faculté de foresterie, de géographie et de géomatique
Département des sciences du bois et de la forêt
Pavillon Charles-Eugène Marchand, bureau 2165
1030 avenue de la Médecine
Québec (Québec) G1V 0A6
Canada

Téléphone: (418) 656-2131 poste 408185
Télécopieur: (418) 656-7493

Personnel
Postdocs
• Karen Cristine Gonçalves dos Santos
• Chinedu Obieze
Professionals
• Isabelle Giguère

Graduate Student Advisor

Doctorates
• Mingming Cui
• Roos Goessen
• Anthony Piot
• Loïc Soumila
• Lisa Tischenko
Master's
• Justine Gagné
• Lyne Touchette

Co-Advisor

Doctorates
• Jérôme Chapuis
Former Personnel
• Gwylim Blackburn (Postdoc 2019)
• Julien Prunier (Prof. de rech. 2018)
• Loïc Soumila (Stage 2018)
• Julien Prunier (Postdoc 2016)
Former Students
Co-Director
• Justine Laoué (M.Sc. 2020)
ACADEMIC BACKGROUND
  • Postdoctoral Fellow in Forest Biotechnology, 2009 (University of British Columbia)
  • Doctorate in Genetics, 2004 (Universität Wien)
  • Master's degree in Biochemistry, 1999 (Universität Wien)
RESEARCH THEMES

Scientific expertise

  • Genetics and Tree Improvement
  • Forest genomics
  • Forest biotechnology
  • Wood chemistry

I occupy a position as an assistant professor in tree genomics at Université Laval and the Département des sciences du bois et de la forêt, Faculté de foresterie, de géographie et de géomatique. My long-term research program is related to the elucidation of the genetic underpinnings of wood quality traits in the context of tree improvement with a wider focus on wood component valorization. I also perform research on understanding and improving biotic and abiotic stress resilience in forest tree species. Based on my training as a biochemist, I have a broad interest in genomics and in various organisms and therefore I have recently started to investigate the genetic basis of invasiveness attributes of several serious alien forest pests in Canada. Related to my research in forest genomics, I have profound interest to help support the economic potential of forest genomics in Canada. I am looking forward to the many fruitful collaborations with my colleagues at the CEF.

You can download all my bibliography in the BibTeX, BibTeX-CSV or EndNote format.
PUBLICATIONS
Books



Book chapters


  1. Yan, X.-M., Zhou, S.-S., Porth, I., Mao, J.-F. (2020) The Terpene Synthase Gene Family in Norway Spruce. In The Spruce Genome. (Porth, I., De la Torre, A., Eds.) Springer, Cham. (Abstract | EndNote | BibTeX-CSV | BibTeX | Scholar )
  2. El-Kassaby, Y.A., Ratcliffe, B., El-Dien, O.G., Sun, S., Chen, C., CappaIlga, E.P., Porth, I. (2020) Genomic Selection in Canadian Spruces. In The Spruce Genome. (Porth, I. and De la Torre, A., Eds.) Springer, Cham. (Abstract | EndNote | BibTeX-CSV | BibTeX | Scholar )
  3. Porth, I., De la Torre, A.and El-Kassaby, Y.A. (2020) Prospects: The Spruce Genome, a Model for Understanding Gymnosperm Evolution and Supporting Tree Improvement Efforts. In The Spruce Genome. (Porth, I. and De la Torre, A., Eds.) Springer, Cham. (Abstract | EndNote | BibTeX-CSV | BibTeX | Scholar )
  4. Kremer, A., Casasoli, M., Berreneche, T., Bodenes, C., Sisco, P., Kubisiak, T.L., Scalfi, M., Leonardi, S., Bakker, E., Buiteveld, J. et al. (2007) Fagaceae trees. In Forest Trees. (Kole C, Eds.) Springer, 161–187. (EndNote | BibTeX-CSV | BibTeX | Scholar )


Edited books and proceedings


  1. Porth, I. and De la Torre, A., Eds. (2020) The Spruce Genome. Springer. (URL  | Abstract | EndNote | BibTeX-CSV | BibTeX | Scholar )


Peer-reviewed articles


  1. Xu, J., Luo, H., Zhou, S.-S., Jiao, S.Q., Jia, K.-H., Nie, S., Liu, H., Zhao, W., Wang, X.-R., El-Kassaby, Y.A. et al. (2022) UV-B and UV-C radiation trigger both common and distinctive signal perceptions and transmissions in Pinus tabuliformis Carr. Tree Physiology. (Abstract | EndNote | BibTeX-CSV | BibTeX | Scholar )
  2. Cui, M., Wu, Y., Javal, M., Giguère, I., Roux, G., Andres, J.A., Keena, M., Shi, J., Wang, B., Braswell, E. et al. (2022) Genome-scale phylogeography resolves the native population structure of the Asian longhorned beetle, Anoplophora glabripennis (Motschulsky). Evolutionary Applications, 15(6):934-953. (URL  | Abstract | EndNote | BibTeX-CSV | BibTeX | Scholar )
  3. Jia, K.-H., Wang, Z.-X., Wang, L., Li, G.-Y., Zhang, W., Wang, X.-L., Xu, F.-J., Jiao, S.-Q., Zhou, S.-S., Liu, H. et al. (2022) SubPhaser: a robust allopolyploid subgenome phasing method based on subgenome-specific k-mers. New Phytologist, 235(2):801-809. (URL  | Abstract | EndNote | BibTeX-CSV | BibTeX | Scholar )
  4. Piot, A., El-Kassaby, Y.A., Porth, I. (2022) Genomics-Based Systems and Multi-disciplinary Approaches to Unlock Complex Gene Networks Underlying Wood Formation. Current Forestry Reports, 8(2):166-180. (URL  | Abstract | EndNote | BibTeX-CSV | BibTeX | Scholar )
  5. Santangelo, J.S., Ness, R.W., Cohan, B., Fitzpatrick, C.R., Innes, S.G., Koch, S., Miles, L.S., Munim, S., Peres-Neto, P.R., Prashad, C. et al. (2022) Global urban environmental change drives adaptation in white clover. Science, 375(6586):1275-1281. (URL  | Abstract | EndNote | BibTeX-CSV | BibTeX | Scholar )
  6. Goessen, R., Isabel, N., Wehenkel, C., Pavy, N., Tischenko, L., Touchette, L., Giguère, I., Gros-Louis, M.-C., Laroche, J., Boyle, B. et al. (2022) Coping with environmental constraints: Geographically divergent adaptive evolution and germination plasticity in the transcontinental Populus tremuloides. Plants, People, Planet. (URL  | Abstract | EndNote | BibTeX-CSV | BibTeX | Scholar )
  7. Ma, B., Wu, J., Shi, T.-L., Yang, Y.-Y., Wang, W.-B., Zheng, Y., Su, S.-C., Yao, Y.-C., Xue, W.-B., Porth, I. et al. (2022) Lilac (Syringa oblata) genome provides insights into its evolution and molecular mechanism of petal color change. Communications Biology, 5(1). (Abstract | EndNote | BibTeX-CSV | BibTeX | Scholar )
  8. Cheng, S.-P., Jia, K.-H., Liu, H., Zhang, R.-G., Li, Z.-C., Zhou, S.-S., Shi, T.-L., Ma, A.-C., Yu, C.-W., Gao, C. et al. (2021) Haplotype-resolved genome assembly and allele-specific gene expression in cultivated ginger. Horticulture Research, 8(1). (Scopus  | Abstract | EndNote | BibTeX-CSV | BibTeX | Scholar )
  9. Jia, K.-H., Liu, H., Zhang, R.-G., Xu, J., Zhou, S.-S., Jiao, S.-Q., Yan, X.-M., Tian, X.-C., Shi, T.-L., Luo, H. et al. (2021) Chromosome-scale assembly and evolution of the tetraploid Salvia splendens (Lamiaceae) genome. Horticulture Research, 8(1). (Scopus  | Abstract | EndNote | BibTeX-CSV | BibTeX | Scholar )
  10. Xu, J., Nie, S., Xu, C.-Q., Liu, H., Jia, K.-H., Zhou, S.-S., Zhao, W., Zhou, X.-Q., El-Kassaby, Y.A., Wang, X.-R. et al. (2021) UV-B-induced molecular mechanisms of stress physiology responses in the major northern Chinese conifer Pinus tabuliformis Carr. Tree physiology, 41(7):1247-1263. (Scopus  | Abstract | EndNote | BibTeX-CSV | BibTeX | Scholar )
  11. Zhou, S.-S., Yan, X.-M., Zhang, K.-F., Liu, H., Xu, J., Nie, S., Jia, K.-H., Jiao, S.-Q., Zhao, W., Zhao, Y.-J. et al. (2021) A comprehensive annotation dataset of intact LTR retrotransposons of 300 plant genomes. Scientific Data, 8(1). (Scopus  | Abstract | EndNote | BibTeX-CSV | BibTeX | Scholar )
  12. Jiao, S.-Q., Li, M., Zhu, Y.-J., Zhou, S.-S., Zhao, S.-W., Li, Z.-C., Bao, Y.-T., Shi, T.-L., Zhang, H.-J., Yang, X.-L. et al. (2021) Variation in platycladus orientalis (Cupressaceae) reproductive output and its effect on seed orchard crops’ genetic diversity. Forests, 12(11). (Scopus  | Abstract | EndNote | BibTeX-CSV | BibTeX | Scholar )
  13. Touchette, L., Beaudoin, J.-M., Isabel, N., Gelinas, N., Porth, I. (2021) How to put forest and conservation genomics into motion for and with Indigenous communities? Forestry Chronicle, 97(3):300-314. (Abstract | EndNote | BibTeX-CSV | BibTeX | Scholar )
  14. Klapste, J., Kremer, A., Burg, K., Garnier-Gere, P., El-Dien, O.G., Ratcliffe, B., El-Kassaby, Y.A., Porth, I. (2021) Quercus species divergence is driven by natural selection on evolutionarily less integrated traits. Heredity, 126(2):366-382. (Abstract | EndNote | BibTeX-CSV | BibTeX | Scholar )
  15. Touchette, L., Beaudoin, J.-M., Isabel, N., Gelinas, N., Porth, I. (2021) Comment mettre la génomique forestière et la génomique de la conservation au service des communautés autochtones? Forestry Chronicle, 97(3):300-314. (Abstract | EndNote | BibTeX-CSV | BibTeX | Scholar )
  16. Liu, H., Yan, X.-M., Wang, Xin-rui, Zhang, D.-X., Zhou, Q., Shi, T.-L., Jia, K.-H., Tian, X.-C., Zhou, S.-S., Zhang, R.-G. et al. (2021) Centromere-Specific Retrotransposons and Very-Long-Chain Fatty Acid Biosynthesis in the Genome of Yellowhorn (Xanthoceras sorbifolium, Sapindaceae), an Oil-Producing Tree With Significant Drought Resistance. Frontiers in Plant Science, 12. (Abstract | EndNote | BibTeX-CSV | BibTeX | Scholar )
  17. De La Torre, A.R., Piot, A., Liu, B., Wilhite, B., Weiss, M., Porth, I. (2020) Functional and morphological evolution in gymnosperms: A portrait of implicated gene families. Evolutionary Applications, 13(1):210-227. (Scopus  | Abstract | EndNote | BibTeX-CSV | BibTeX | Scholar )
  18. Jiao, S.-Q., Dong, A.-X., Shi, T.-L., Liu, H., Porth, I., Xin, H.-B., Mao, J.-F. (2020) Development of a Large Gene-Associated SSR Marker Set and in-Depth Genetic Characterization in Scarlet Sage. Frontiers in Genetics, 11:504. (URL  | Abstract | EndNote | BibTeX-CSV | BibTeX | Scholar )
  19. Blackburn, G.S., Bilodeau, P., Cooke, T., Cui, M., Cusson, M., Hamelin, R.C., Keena, M.A., Picq, S., Roe, A.D., Shi, J. et al. (2020) An Applied Empirical Framework for Invasion Science: Confronting Biological Invasion Through Collaborative Research Aimed at Tool Production. Annals of the Entomological Society of America, 113(4):230-245. (URL  | Abstract | EndNote | BibTeX-CSV | BibTeX | Scholar )
  20. Yang, F.-S., Nie, S., Liu, H., Shi, T.-L., Tian, X.-C., Zhou, S.-S., Bao, Y.-T., Jia, K.-H., Guo, J.-F., Zhao, W. et al. (2020) Chromosome-level genome assembly of a parent species of widely cultivated azaleas. Nature Communications, 11(1):5269. (URL  | Abstract | EndNote | BibTeX-CSV | BibTeX | Scholar )
  21. Thistlethwaite, F.R., El-Dien, O.G., Ratcliffe, B., Klápště, J., Porth, I., Chen, C., Stoehr, M.U., Ingvarsson, P.K., El-Kassaby, Y.A. (2020) Linkage disequilibrium vs. pedigree: Genomic selection prediction accuracy in conifer species. PLoS ONE, 15(6). (Scopus  | Abstract | EndNote | BibTeX-CSV | BibTeX | Scholar )
  22. Piot, A., Prunier, J., Isabel, N., Klápště, J., El-Kassaby, Y. A., Villarreal, J.C., Porth, I. (2020) Genomic Diversity Evaluation of Populus trichocarpa Germplasm for Rare Variant Genetic Association Studies. Frontiers in Genetics, 10:1384. (URL  | Abstract | EndNote | BibTeX-CSV | BibTeX | Scholar )
  23. Xu, C.-Q., Liu, H., Zhou, S.-S., Zhang, D.-X., Zhao, W., Wang, S., Chen, F., Sun, Y.-Q., Nie, S., Jia, K.-H. et al. (2019) Genome sequence of Malania oleifera, a tree with great value for nervonic acid production. GigaScience, 8(2). (Scopus  | Abstract | EndNote | BibTeX-CSV | BibTeX | Scholar )
  24. Thistlethwaite, F.R., Ratcliffe, B., Klápště, J., Porth, I., Chen, C., Stoehr, M.U., El-Kassaby, Y.A. (2019) Genomic selection of juvenile height across a single-generational gap in Douglas-fir. Heredity, 122:848-863. (URL  | Abstract | EndNote | BibTeX-CSV | BibTeX | Scholar )
  25. Liu, S.-S., Hu, Y.-H., Maghuly, F., Porth, I., Mao, J.-F. (2019) The complete chloroplast genome sequence annotation for Malania oleifera, a critically endangered and important bioresource tree. Conservation Genetics Resources, 11:271–274. (Abstract | EndNote | BibTeX-CSV | BibTeX | Scholar )
  26. Jiao, S.-Q., Sun, Y.-Q., Zhang, D.-X., Gao, Q., Jin, Y., Liu, H., Ma, Y., Yang, Y., Porth, I., Mao, J.-F. (2019) Development of novel EST-SSR markers for Ephedra sinica (Ephedraceae) by transcriptome database mining. Applications in Plant Sciences, 7(1). (Scopus  | Abstract | EndNote | BibTeX-CSV | BibTeX | Scholar )
  27. Prunier, J., Lemaçon, A., Bastien, A., Jafarikia, M., Porth, I., Robert, C., Droit, A. (2019) LD-annot: A Bioinformatics Tool to Automatically Provide Candidate SNPs With Annotations for Genetically Linked Genes. Frontiers in Genetics, 10. (Scopus  | Abstract | EndNote | BibTeX-CSV | BibTeX | Scholar )
  28. Roe, A.D., Torson, A.S., Bilodeau, G., Bilodeau, P., Blackburn, G.S., Cui, M., Cusson, M., Doucet, D., Griess, V.C., Lafond, V. et al. (2019) Biosurveillance of forest insects: part I. Integration and application of genomic tools to the surveillance of non-native forest insects. Journal of Pest Science, 92(1):51-70. (URL  | Abstract | EndNote | BibTeX-CSV | BibTeX | Scholar )
  29. Zhou, S.-S., Xing, Z., Liu, H., Hu, X.-G., Gao, Q., Xu, J., Jiao, S.-Q., Jia, K.-H., Jin, Y.Q., Zhao, W. et al. (2019) In-depth transcriptome characterization uncovers distinct gene family expansions for Cupressus gigantea important to this long-lived species' adaptability to environmental cues. BMC Genomics, 20(1). (Scopus  | Abstract | EndNote | BibTeX-CSV | BibTeX | Scholar )
  30. Bilodeau, P., Roe, A.D., Bilodeau, G., Blackburn, G.S., Cui, M., Cusson, M., Doucet, D., Griess, V.C., Lafond, V.M.A., Nilausen, C. et al. (2019) Biosurveillance of forest insects: part II. Adoption of genomic tools by end user communities and barriers to integration. Journal of Pest Science, 92(1):71-82. (URL  | Abstract | EndNote | BibTeX-CSV | BibTeX | Scholar )
  31. El-Dien, O.G., Ratcliffe, B., Klapste, J., Porth, I., Chen, C., El-Kassaby, Y.A. (2018) Multienvironment genomic variance decomposition analysis of open-pollinated Interior spruce (Picea glauca x engelmannii). Molecular Breeding, 38(3). (Scopus  | Abstract | EndNote | BibTeX-CSV | BibTeX | Scholar )
  32. Dong, A.-X., Xin, H.-B., Li, Z.-J., Liu, H., Sun, Y.-Q., Nie, S., Zhao, Z.-N., Cui, R.-F., Zhang, R.-G., Yun, Q.-Z. et al. (2018) High-quality assembly of the reference genome for scarlet sage, Salvia splendens, an economically important ornamental plant. Gigascience, 7(7). (Scopus  | Abstract | EndNote | BibTeX-CSV | BibTeX | Scholar )
  33. Porth, I., White, R., Jaquish, B., Ritland, K. (2018) Partial correlation analysis of transcriptomes helps detangle the growth and defense network in spruce. New Phytologist, 218(4):1349-1359. (URL  | Abstract | EndNote | BibTeX-CSV | BibTeX | Scholar )
  34. Porth, I., Maghuly, F., El-Kassaby, Y.A., Mansfield, S. (2018) Localization of gene expression, tissue specificity of Populus xylosyltransferase genes by isolation and functional characterization of their promoters. Plant Cell, Tissue and Organ Culture, 134(3):503-508. (URL  | Abstract | EndNote | BibTeX-CSV | BibTeX | Scholar )
  35. Prunier, J., Giguère, I., Ryan, N., Guy, R., Soolanayakanahally, R., Isabel, N., MacKay, J., Porth, I. (2018) Gene copy number variations involved in balsam poplar (Populus balsamifera L.) adaptive variations. Molecular Ecology. (URL  | Abstract | EndNote | BibTeX-CSV | BibTeX | Scholar )
  36. Thistlethwaite, F.R., Ratcliffe, B., Klapste, J., Porth, I., Chen, C., Stoehr, M.U., El-Kassaby, Y.A. (2017) Genomic prediction accuracies in space and time for height and wood density of Douglas-fir using exome capture as the genotyping platform. BMC Genomics, 18(1). (Scopus  | Abstract | EndNote | BibTeX-CSV | BibTeX | Scholar )
  37. Ratcliffe, B., El-Dien, O.G., Cappa, E.P., Porth, I., Klapste, J., Chen, C., El-Kassaby, Y.A. (2017) Single-step BLUP with varying genotyping effort in open-pollinated Picea glauca. G3: Genes|Genomes|Genetics, 7(3):935-942. (Scopus  | Abstract | EndNote | BibTeX-CSV | BibTeX | Scholar )
  38. Du, R., Niu, S., Liu, Y., Sun, X., Porth, I., El-Kassaby, Y.A., Li, W. (2017) The gibberellin GID1-DELLA signalling module exists in evolutionarily ancient conifers. Scientific Reports, 7(1). (Scopus  | Abstract | EndNote | BibTeX-CSV | BibTeX | Scholar )
  39. McKown, A.D., Klapste, J., Guy, R.D., Soolanayakanahally, R.Y., La Mantia, J., Porth, I., Skyba, O., Unda, F., Douglas, C.J., El-Kassaby, Y.A. et al. (2017) Sexual homomorphism in dioecious trees: Extensive tests fail to detect sexual dimorphism in Populus. Scientific Reports, 7(1). (Scopus  | Abstract | EndNote | BibTeX-CSV | BibTeX | Scholar )
  40. El-Dien, O. G., Ratcliffe, B., Klapste, J., Porth, I., Chen, C., El-Kassaby, Y. A. (2016) Implementation of the realized genomic relationship matrix to open-pollinated white spruce family testing for disentangling additive from nonadditive genetic effects. G3: Genes|Genomes|Genetics, 6(3):743-753. (Scopus  | Abstract | EndNote | BibTeX-CSV | BibTeX | Scholar )
  41. Wang, W., Li, E., Porth, I., Chen, J.-G., Mansfield, S. D., Douglas, C. J., Wang, S. (2016) Spatially and temporally restricted expression of PtrMYB021 regulates secondary cell wall formation in Arabidopsis. Journal of Plant Biology, 59(1):16-23. (Scopus  | Abstract | EndNote | BibTeX-CSV | BibTeX | Scholar )
  42. Niu, S., Yuan, H., Sun, X., Porth, I., Li, Y., El-Kassaby, Y. A., Li, W. (2016) A transcriptomics investigation into pine reproductive organ development. New Phytologist, 209(3):1278-1289. (Scopus  | Abstract | EndNote | BibTeX-CSV | BibTeX | Scholar )
  43. Porth, I., Garnier-Gere, P., Klapste, J., Scotti-Saintagne, C., El-Kassaby, Y. A., Burg, K., Kremer, A. (2016) Species-specific alleles at a β-tubulin gene show significant associations with leaf morphological variation within Quercus petraea and Q. robur populations. Tree Genetics and Genomes, 12(4). (Scopus  | Abstract | EndNote | BibTeX-CSV | BibTeX | Scholar )
  44. Porth, I., Bull, G., Cool, J., Gélinas, N., Griess, V. (2016) An Economic Assessment of Genomics Research and Development Initiative Projects in Forestry. CAB Reviews: Perspectives in Agriculture, Veterinary Science, Nutrition and Natural Resources, 11(16):1-10. (Abstract | EndNote | BibTeX-CSV | BibTeX | Scholar )
  45. Ratcliffe, B., El-Dien, O. G., Klapste, J., Porth, I., Chen, C., Jaquish, B., El-Kassaby, Y.A. (2015) A comparison of genomic selection models across time in interior spruce (Picea engelmannii x glauca) using unordered SNP imputation methods. Heredity, 115(6):547-555. (Scopus  | Abstract | EndNote | BibTeX-CSV | BibTeX | Scholar )
  46. Porth, I., Bull, G., Ahmed, S., El-Kassaby, Y. A., Boyland, M. (2015) Forest genomics research and development in Canada: Priorities for developing an economic framework. Forestry Chronicle, 91(1):60-70. (Scopus  | Abstract | EndNote | BibTeX-CSV | BibTeX | Scholar )
  47. Gamal El-Dien, O., Ratcliffe, B., Klapste, J., Chen, C., Porth, I., El-Kassaby, Y.A. (2015) Prediction accuracies for growth and wood attributes of interior spruce in space using genotyping-by-sequencing. BMC Genomics, 16(1). (Scopus  | Abstract | EndNote | BibTeX-CSV | BibTeX | Scholar )
  48. Muchero, W., Guo, J., DiFazio, S. P., Chen, J.-G., Ranjan, P., Slavov, G. T., Gunter, L. E., Jawdy, S., Bryan, A. C., Sykes, R. et al. (2015) High-resolution genetic mapping of allelic variants associated with cell wall chemistry in Populus. BMC Genomics, 16(1). (Scopus  | Abstract | EndNote | BibTeX-CSV | BibTeX | Scholar )
  49. Porth, I., Klapste, J., McKown, A. D., La Mantia, J., Guy, R. D., Ingvarsson, P. K., Hamelin, R., Mansfield, S. D., Ehlting, J., Douglas, C. J. et al. (2015) Evolutionary quantitative genomics of Populus trichocarpa. PLoS ONE, 10(11). (Scopus  | Abstract | EndNote | BibTeX-CSV | BibTeX | Scholar )
  50. Porth, I., El-Kassaby, Y.A. (2015) Using Populus as a lignocellulosic feedstock for bioethanol. Biotechnology Journal, 10(4):510-524. (Scopus  | Abstract | EndNote | BibTeX-CSV | BibTeX | Scholar )
  51. Mckown, A. D., Klapste, J., Guy, R. D., Geraldes, A., Porth, I., Hannemann, J., Friedmann, M., Muchero, W., Tuskan, G. A., Ehlting, J. et al. (2014) Genome-wide association implicates numerous genes underlying ecological trait variation in natural populations of Populus trichocarpa. New Phytologist, 203(2):535-553. (Scopus  | Abstract | EndNote | BibTeX-CSV | BibTeX | Scholar )
  52. Porth, I., El-Kassaby, Y. A. (2014) Assessment of the genetic diversity in forest tree populations using molecular markers. Diversity, 6(2):283-295. (Scopus  | Abstract | EndNote | BibTeX-CSV | BibTeX | Scholar )
  53. Porth, I., El-Kassaby, Y. A. (2014) Current status of the development of genetically modified (GM) forest trees world-wide: A comparison with the development of other GM plants in agriculture. CAB Reviews: Perspectives in Agriculture, Veterinary Science, Nutrition and Natural Resources, 9. (Scopus  | Abstract | EndNote | BibTeX-CSV | BibTeX | Scholar )
  54. Porth, I., Klapste, J., McKown, A. D., La Mantia, J., Hamelin, R. C., Skyba, O., Unda, F., Friedmann, M. C., Cronk, Q. C. B., Ehlting, J. et al. (2014) Extensive functional pleiotropy of REVOLUTA substantiated through forward genetics. Plant Physiology, 164(2):548-554. (Scopus  | Abstract | EndNote | BibTeX-CSV | BibTeX | Scholar )
  55. Wang, S., Li, E., Porth, I., Chen, J.-G., Mansfield, S. D., Douglas, C. J. (2014) Regulation of secondary cell wall biosynthesis by poplar R2R3 MYB transcription factor PtrMYB152 in Arabidopsis. Scientific Reports, 4. (Scopus  | Abstract | EndNote | BibTeX-CSV | BibTeX | Scholar )
  56. Porth, I., Klapste, J., Skyba, O., Lai, B. S. K., Geraldes, A., Muchero, W., Tuskan, G. A., Douglas, C. J., El-Kassaby, Y. A., Mansfield, S. D. (2013) Populus trichocarpa cell wall chemistry and ultrastructure trait variation, genetic control and genetic correlations. New Phytologist, 197(3):777-790. (Scopus  | Abstract | EndNote | BibTeX-CSV | BibTeX | Scholar )
  57. Geraldes, A., Difazio, S. P., Slavov, G. T., Ranjan, P., Muchero, W., Hannemann, J., Gunter, L. E., Wymore, A. M., Grassa, C. J., Farzaneh, N. et al. (2013) A 34K SNP genotyping array for Populus trichocarpa: Design, application to the study of natural populations and transferability to other Populus species. Molecular Ecology Resources, 13(2):306-323. (Scopus  | Abstract | EndNote | BibTeX-CSV | BibTeX | Scholar )
  58. Porth, I., Klapste, J., Skyba, O., Hannemann, J., Mckown, A. D., Guy, R. D., Difazio, S. P., Muchero, W., Ranjan, P., Tuskan, G. A. et al. (2013) Genome-wide association mapping for wood characteristics in Populus identifies an array of candidate single nucleotide polymorphisms. New Phytologist, 200(3):710-726. (Scopus  | Abstract | EndNote | BibTeX-CSV | BibTeX | Scholar )
  59. Porth, I., Klapste, J., Skyba, O., Friedmann, M. C., Hannemann, J., Ehlting, J., El-Kassaby, Y. A., Mansfield, S. D., Douglas, C. J. (2013) Network analysis reveals the relationship among wood properties, gene expression levels and genotypes of natural Populus trichocarpa accessions. New Phytologist, 200(3):727-742. (Scopus  | Abstract | EndNote | BibTeX-CSV | BibTeX | Scholar )
  60. Porth, I., White, R., Jaquish, B., Alfaro, R., Ritland, C., Ritland, K. (2012) Genetical Genomics Identifies the Genetic Architecture for Growth and Weevil Resistance in Spruce. PLoS ONE, 7(9). (Scopus  | Abstract | EndNote | BibTeX-CSV | BibTeX | Scholar )
  61. Porth, I., Hamberger, B., White, R., Ritland, K. (2011) Defense mechanisms against herbivory in Picea: Sequence evolution and expression regulation of gene family members in the phenylpropanoid pathway. BMC Genomics, 12. (Scopus  | Abstract | EndNote | BibTeX-CSV | BibTeX | Scholar )
  62. Casasoli, M., Derory, J., Morera-Dutrey, C., Brendel, O., Porth, I., Guehl, J.-M., Villani, F., Kremer, A. (2006) Comparison of quantitative trait loci for adaptive traits between oak and chestnut based on an expressed sequence tag consensus map. Genetics, 172(1):533-546. (Scopus  | Abstract | EndNote | BibTeX-CSV | BibTeX | Scholar )
  63. Porth, I., Scotti-Saintagne, C., Barreneche, T., Kremer, A., Burg, K. (2005) Linkage mapping of osmotic stress induced genes of oak. Tree Genetics and Genomes, 1(1):31-40. (Scopus  | Abstract | EndNote | BibTeX-CSV | BibTeX | Scholar )
  64. Porth, I., Koch, M., Berenyi, M., Burg, A., Burg, K. (2005) Identification of adaptation-specific differences in mRNA expression of sessile and pedunculate oak based on osmotic-stress-induced genes. Tree Physiology, 25(10):1317-1329. (Scopus  | Abstract | EndNote | BibTeX-CSV | BibTeX | Scholar )
  65. Scotti-Saintagne, C., Mariette, S., Porth, I., Goicoechea, P. G., Barreneche, T., Bodénès, C., Burg, K., Kremer, A. (2004) Genome scanning for interspecific differentiation between two closely related oak species [Quercus robur L. and Q. petraea (Matt.) Liebl.]. Genetics, 168(3):1615-1626. (Scopus  | Abstract | EndNote | BibTeX-CSV | BibTeX | Scholar )
  66. Baurecht, D., Porth, I., Fringeli, U. P. (2002) A new method of phase sensitive detection in modulation spectroscopy applied to temperature induced folding and unfolding of RNase A. Vibrational Spectroscopy, 30(1):85-92. (Scopus  | Abstract | EndNote | BibTeX-CSV | BibTeX | Scholar )


Articles published in proceedings


  1. Beaulieu, J., Porth, I., Bousquet, J. (2020) Forest genomics and genetics at Université Laval. In Proceedings of the 36th Meeting of the Canadian Forest Genetics Association, Lac Delage, Québec, August 19-23, 2019. Part I. (McPhee, D.A. and Simpson, J.D., Eds.) (EndNote | BibTeX-CSV | BibTeX | Scholar )
  2. Bousquet, J., Porth, I., Beaulieu, J. (2018) Forest genomics and genetics at Université Laval. In Proceedings of the 35th Meeting of the Canadian Forest Genetics Association, Univ. of Alberta, Edmonton, June 26-29, 2017. Part I.. (McPhee, D.A. and Simpson, J.D., Eds.) Pages 24-37. Canadian Forest Service, Fredericton. (EndNote | BibTeX-CSV | BibTeX | Scholar )


Scientific reports, manuals and others


  1. Bousquet, J., Desponts, M., Godbout, J., Isabel, N., Lenz, P., Perron, M., Porth, I., Otis Prud’homme, G., Beaulieu, J. (2021) L’importance des plantations génétiques pour évaluer la capacité d’adaptation des essences en reboisement face aux changements climatiques. Mémoire, Consultation publique sur le projet de Stratégie d’adaptation de la gestion et de l’aménagement des forêts aux changements climatiques du Ministère des forêts, de la faune et des parcs du Québec. (EndNote | BibTeX-CSV | BibTeX | Scholar )
  2. Bousquet, J., Porth, I., Beaulieu, J. (2017) Forest genomics and genetics at Université Laval. Technical report, CFGA Report. (EndNote | BibTeX-CSV | BibTeX | Scholar )
  3. Porth, I., Gélinas, N., Bull, G. (2015) An Economic Assessment of Forestry Genomics Research and Development Initiative (GRDI) projects. Technical report, Canadian Forest Service. (EndNote | BibTeX-CSV | BibTeX | Scholar )
  4. Bull, G., Porth, I., Ahmed, S. (2014) Review of the State of Forest Genomics Research and Development. Technical report, Canadian Forest Service. (EndNote | BibTeX-CSV | BibTeX | Scholar )


Theses, dissertations and essays


  1. Porth, I. (2004) Organ specific expression and genetic mapping of osmotic regulated genes of oak. PhD thesis, Vienna University. (EndNote | BibTeX-CSV | BibTeX | Scholar )


Supervised theses, dissertations and essays



Non peer-reviewed articles


  1. Porth, I., Ritland, K. (2018) Inferring gene networks for growth and defense in spruce. Branchlines, Faculty of Forestry. Branchlines, 29(1):16-17. (PDF  | EndNote | BibTeX-CSV | BibTeX | Scholar )


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