LiGuanChenEtAl2016

Référence

Li, W., Guan, W., Chen, H., Liao, B., Hu, J., Peng, C., Rui, J., Tian, J., Zhu, D. and He, Y. (2016) Archaeal communities in the sediments of different mangrove stands at Dongzhaigang, China. Journal of Soils and Sediments, 16(7):1995-2004. (Scopus )

Résumé

Purpose: Knowledge of archaeal communities is essential for understanding of the mechanism of carbon and nitrogen cycle in the mangrove sediment ecosystem. Presently, little is known about archaeal communities in the Dongzhaigang mangrove sediments. This study aimed to characterize the archaeal communities in sediments of different mangrove stands and to find out the correlations between archaeal communities and the environmental factors of sediments. Materials and methods: Sediment samples were collected from the Dongzhaigang mangrove forest for analysis of soil properties and archaeal communities, by national standard methods and Illumina Miseq archaeal 16S ribosomal RNA (rRNA) gene sequencing, respectively. Results and discussion: The archaeal community in the Dongzhaigang mangrove forest was constituted by some phyla from “TACK”� and “DPANN”� supergroups, and dominated by Euryarchaeota. Among sediments of the four mangroves in Dongzhaigang, principal coordinates analysis (PCoA) scatter plot showed a trend of difference in the archaeal community structure in the Bruguiera gymnoihiza and Kandelia candel stands from that in the Laguncularia racemosa and Sonneratia apetala stands. The abundance of the order Methanosarcinales was the highest in the sediments of K. candel mangroves, whereas the order of Methanobacteriales dominated in B. gymnoihiza sediments. The highest richness and diversity values of Archaea occurred in K. candel sediments, while the lowest in B. gymnoihiza. Pearson correlation showed the significant relationships between sediment properties and some dominant genera, with a positive and significant correlation between sediment properties and genus Methanobacterium, coinciding with the maximum values of sediment properties and abundance of Methanobacterium in the sediment of B. gymnoihiza. Such results indicated that the difference of archaeal community structure among mangrove sediments may be caused by the different sediment characteristics. Methanogenic communities in the Dongzhaigang mangrove forest sediments were, at the order level, constituted by Methanobacteriales, Methanomicrobiales, Methanosarcinales, and Methanomassiliicoccales. Conclusions: The investigation indicated that the Dongzhaigang mangrove sediment ecosystems support diverse archaeal communities and methanogenic communities, and that there was a general trend of difference in the archaeal community structure in the B. gymnoihiza and K. candel mangrove sediments from that in the L. racemosa and S. apetala sediments. Such difference may be caused by the difference in sediment characteristics. © 2016, Springer-Verlag Berlin Heidelberg.

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@ARTICLE { LiGuanChenEtAl2016,
    AUTHOR = { Li, W. and Guan, W. and Chen, H. and Liao, B. and Hu, J. and Peng, C. and Rui, J. and Tian, J. and Zhu, D. and He, Y. },
    TITLE = { Archaeal communities in the sediments of different mangrove stands at Dongzhaigang, China },
    JOURNAL = { Journal of Soils and Sediments },
    YEAR = { 2016 },
    VOLUME = { 16 },
    NUMBER = { 7 },
    PAGES = { 1995-2004 },
    NOTE = { cited By 0 },
    ABSTRACT = { Purpose: Knowledge of archaeal communities is essential for understanding of the mechanism of carbon and nitrogen cycle in the mangrove sediment ecosystem. Presently, little is known about archaeal communities in the Dongzhaigang mangrove sediments. This study aimed to characterize the archaeal communities in sediments of different mangrove stands and to find out the correlations between archaeal communities and the environmental factors of sediments. Materials and methods: Sediment samples were collected from the Dongzhaigang mangrove forest for analysis of soil properties and archaeal communities, by national standard methods and Illumina Miseq archaeal 16S ribosomal RNA (rRNA) gene sequencing, respectively. Results and discussion: The archaeal community in the Dongzhaigang mangrove forest was constituted by some phyla from “TACK”� and “DPANN”� supergroups, and dominated by Euryarchaeota. Among sediments of the four mangroves in Dongzhaigang, principal coordinates analysis (PCoA) scatter plot showed a trend of difference in the archaeal community structure in the Bruguiera gymnoihiza and Kandelia candel stands from that in the Laguncularia racemosa and Sonneratia apetala stands. The abundance of the order Methanosarcinales was the highest in the sediments of K. candel mangroves, whereas the order of Methanobacteriales dominated in B. gymnoihiza sediments. The highest richness and diversity values of Archaea occurred in K. candel sediments, while the lowest in B. gymnoihiza. Pearson correlation showed the significant relationships between sediment properties and some dominant genera, with a positive and significant correlation between sediment properties and genus Methanobacterium, coinciding with the maximum values of sediment properties and abundance of Methanobacterium in the sediment of B. gymnoihiza. Such results indicated that the difference of archaeal community structure among mangrove sediments may be caused by the different sediment characteristics. Methanogenic communities in the Dongzhaigang mangrove forest sediments were, at the order level, constituted by Methanobacteriales, Methanomicrobiales, Methanosarcinales, and Methanomassiliicoccales. Conclusions: The investigation indicated that the Dongzhaigang mangrove sediment ecosystems support diverse archaeal communities and methanogenic communities, and that there was a general trend of difference in the archaeal community structure in the B. gymnoihiza and K. candel mangrove sediments from that in the L. racemosa and S. apetala sediments. Such difference may be caused by the difference in sediment characteristics. © 2016, Springer-Verlag Berlin Heidelberg. },
    AUTHOR_KEYWORDS = { Archaeal communities; Dongzhaigang mangrove; Miseq sequencing; Sediment },
    DOCUMENT_TYPE = { Article },
    DOI = { 10.1007/s11368-016-1427-0 },
    KEYWORDS = { Archaea; Bruguiera; Euryarchaeota; Kandelia candel; Laguncularia racemosa; Methanobacteriales; Methanobacterium; Methanomicrobiales; Methanosarcinales; Rhizophoraceae; Sonneratia apetala },
    SOURCE = { Scopus },
    URL = { https://www.scopus.com/inward/record.uri?eid=2-s2.0-84963771539&partnerID=40&md5=44bca0af1abbaa93f90323eeb8163b0d },
}

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